Functions for PADRINO loading and saving (includes internet download and local versions).
pdb_download() pdb_save() pdb_load()
pdb_download()
pdb_save()
pdb_load()
Download PADRINO pdb objects
pdb
Functions to access columns from PADRINO’s Metadata table and subset database objects.
pdb_citations() pdb_species_accepted() pdb_species_author() pdb_genus() pdb_family() pdb_order() pdb_class() pdb_phylum() pdb_kingdom() pdb_org_type() pdb_dicot_monocot() pdb_angio_gymon() pdb_authors() pdb_journal() pdb_pub_year() pdb_doi() pdb_comments() pdb_appendix_link() pdb_duration() pdb_start_year() pdb_start_month() pdb_end_year() pdb_end_month() pdb_periodicity() pdb_population_name() pdb_number_populations() pdb_lat() pdb_lon() pdb_altitude() pdb_country() pdb_continent() pdb_ecoregion() pdb_studied_sex() pdb_eviction_used() pdb_evict_type() pdb_treatment() pdb_has_time_lag() pdb_has_age() pdb_report()
pdb_citations()
pdb_species_accepted()
pdb_species_author()
pdb_genus()
pdb_family()
pdb_order()
pdb_class()
pdb_phylum()
pdb_kingdom()
pdb_org_type()
pdb_dicot_monocot()
pdb_angio_gymon()
pdb_authors()
pdb_journal()
pdb_pub_year()
pdb_doi()
pdb_comments()
pdb_appendix_link()
pdb_duration()
pdb_start_year()
pdb_start_month()
pdb_end_year()
pdb_end_month()
pdb_periodicity()
pdb_population_name()
pdb_number_populations()
pdb_lat()
pdb_lon()
pdb_altitude()
pdb_country()
pdb_continent()
pdb_ecoregion()
pdb_studied_sex()
pdb_eviction_used()
pdb_evict_type()
pdb_treatment()
pdb_has_time_lag()
pdb_has_age()
pdb_report()
Access pieces of metadata from a pdb object
pdb_subset()
Subset a Padrino database object
Functions to reconstruct published models based on their representations in PADRINO
pdb_make_proto_ipm()
Generate proto_ipms from Padrino objects
pdb_make_ipm()
Generate IPMs from Padrino objects
pdb_proto_ipm_list and pdb_ipm methods for generic ipmr functions.
pdb_proto_ipm_list
pdb_ipm
ipmr
vital_rate_exprs(<pdb_proto_ipm_list>) vital_rate_exprs(<pdb_ipm>) kernel_formulae(<pdb_proto_ipm_list>) kernel_formulae(<pdb_ipm>) domains(<pdb_proto_ipm_list>) domains(<pdb_ipm>) parameters(<pdb_proto_ipm_list>) parameters(<pdb_ipm>) pop_state(<pdb_proto_ipm_list>) pop_state(<pdb_ipm>) vital_rate_funs(<pdb_ipm>) int_mesh(<pdb_ipm>) lambda(<pdb_ipm>) right_ev(<pdb_ipm>) left_ev(<pdb_ipm>) is_conv_to_asymptotic(<pdb_ipm>) conv_plot(<pdb_ipm>) make_iter_kernel(<pdb_ipm>) mean_kernel(<pdb_ipm>) pdb_new_fun_form() `parameters<-`(<pdb_proto_ipm_list>) `vital_rate_exprs<-`(<pdb_proto_ipm_list>) `kernel_formulae<-`(<pdb_proto_ipm_list>) `[`(<pdb_ipm>)
vital_rate_exprs(<pdb_proto_ipm_list>)
vital_rate_exprs(<pdb_ipm>)
kernel_formulae(<pdb_proto_ipm_list>)
kernel_formulae(<pdb_ipm>)
domains(<pdb_proto_ipm_list>)
domains(<pdb_ipm>)
parameters(<pdb_proto_ipm_list>)
parameters(<pdb_ipm>)
pop_state(<pdb_proto_ipm_list>)
pop_state(<pdb_ipm>)
vital_rate_funs(<pdb_ipm>)
int_mesh(<pdb_ipm>)
lambda(<pdb_ipm>)
right_ev(<pdb_ipm>)
left_ev(<pdb_ipm>)
is_conv_to_asymptotic(<pdb_ipm>)
conv_plot(<pdb_ipm>)
make_iter_kernel(<pdb_ipm>)
mean_kernel(<pdb_ipm>)
pdb_new_fun_form()
`parameters<-`(<pdb_proto_ipm_list>)
`vital_rate_exprs<-`(<pdb_proto_ipm_list>)
`kernel_formulae<-`(<pdb_proto_ipm_list>)
`[`(<pdb_ipm>)
Padrino methods for `ipmr` generic functions
print(<pdb>) print(<pdb_proto_ipm_list>)
print(<pdb>)
print(<pdb_proto_ipm_list>)
Print a pdb object.
A subset of PADRINO data stored as part of the Rpadrino package.
Rpadrino
Selected models from the Padrino Database