Data Input/Output

Functions for PADRINO loading and saving (includes internet download and local versions).

pdb_download() pdb_save() pdb_load()

Download PADRINO pdb objects

Metadata Accessors and Data Management

Functions to access columns from PADRINO’s Metadata table and subset database objects.

pdb_citations() pdb_species_accepted() pdb_species_author() pdb_genus() pdb_family() pdb_order() pdb_class() pdb_phylum() pdb_kingdom() pdb_org_type() pdb_dicot_monocot() pdb_angio_gymon() pdb_authors() pdb_journal() pdb_pub_year() pdb_doi() pdb_comments() pdb_appendix_link() pdb_duration() pdb_start_year() pdb_start_month() pdb_end_year() pdb_end_month() pdb_periodicity() pdb_population_name() pdb_number_populations() pdb_lat() pdb_lon() pdb_altitude() pdb_country() pdb_continent() pdb_ecoregion() pdb_studied_sex() pdb_eviction_used() pdb_evict_type() pdb_treatment() pdb_has_time_lag() pdb_has_age() pdb_report()

Access pieces of metadata from a pdb object

pdb_subset()

Subset a Padrino database object

Model Reconstruction

Functions to reconstruct published models based on their representations in PADRINO

pdb_make_proto_ipm()

Generate proto_ipms from Padrino objects

pdb_make_ipm()

Generate IPMs from Padrino objects

PADRINO Methods for ipmr Generics

pdb_proto_ipm_list and pdb_ipm methods for generic ipmr functions.

vital_rate_exprs(<pdb_proto_ipm_list>) vital_rate_exprs(<pdb_ipm>) kernel_formulae(<pdb_proto_ipm_list>) kernel_formulae(<pdb_ipm>) domains(<pdb_proto_ipm_list>) domains(<pdb_ipm>) parameters(<pdb_proto_ipm_list>) parameters(<pdb_ipm>) pop_state(<pdb_proto_ipm_list>) pop_state(<pdb_ipm>) vital_rate_funs(<pdb_ipm>) int_mesh(<pdb_ipm>) lambda(<pdb_ipm>) right_ev(<pdb_ipm>) left_ev(<pdb_ipm>) is_conv_to_asymptotic(<pdb_ipm>) conv_plot(<pdb_ipm>) make_iter_kernel(<pdb_ipm>) mean_kernel(<pdb_ipm>) pdb_new_fun_form() `parameters<-`(<pdb_proto_ipm_list>) `vital_rate_exprs<-`(<pdb_proto_ipm_list>) `kernel_formulae<-`(<pdb_proto_ipm_list>) `[`(<pdb_ipm>)

Padrino methods for `ipmr` generic functions

print(<pdb>) print(<pdb_proto_ipm_list>)

Print a pdb object.

PADRINO

A subset of PADRINO data stored as part of the Rpadrino package.

pdb

Selected models from the Padrino Database